removed line option

[mothur.git] / summarycommand.h

diff --git a/summarycommand.h b/summarycommand.h
index b12f76f4e9812b7d26de87769d746167fe3552c1..6ee8c4a522d517b563318d92b840f708b20603e5 100644 (file)
--- a/summarycommand.h
+++ b/summarycommand.h
@@ -16,18 +16,6 @@
 #include "readotu.h"
 #include "validcalculator.h"
 
-/* The summary() command:
-       The summary command can only be executed after a successful read.list, read.sabund or read.rabund command, with one exception. 
-       The summary command can be executed after a successful cluster command.  It will use the .list file from the output of the cluster. 
-       The summary command outputs a file for each estimator you choose to use.  The summary command parameters are label, line, summary. 
-        No parameters are required, but you may not use both the line and label  parameters at the same time. 
-        The summary command should be in the following format: summary(label=yourLabel, line=yourLines, summary=yourEstimators). 
-        Example summary(label=unique-.01-.03, line=0,5,10, summary=collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson). 
-        The default value for summary is collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson.  
-        The valid summary estimators are: collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson.  
-        The label and line parameters are used to analyze specific lines in your input.  */
-
-
 class GlobalData;
 
 class SummaryCommand : public Command {
@@ -50,9 +38,8 @@ private:
        int abund, size;
 
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string line, label, calc;
+       string label, calc;
        vector<string>  Estimators;
 
 };