fixes while testing

[mothur.git] / summarycommand.cpp

diff --git a/summarycommand.cpp b/summarycommand.cpp
index 17258159b7562dbee9830a03746602d935bb43a6..d68d00ac6258e0ac10346ce5b67b7d10a2de7495 100644 (file)
--- a/summarycommand.cpp
+++ b/summarycommand.cpp
@@ -49,6 +49,7 @@ vector<string> SummaryCommand::getValidParameters(){
 //**********************************************************************************************************************
 SummaryCommand::SummaryCommand(){      
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["summary"] = tempOutNames;