fixed phylo.diversity

[mothur.git] / summarycommand.cpp

diff --git a/summarycommand.cpp b/summarycommand.cpp
index 70470b015684b386947056686789da5077000565..208544adf1bd7ec2f0f59603c4eb86840275cf80 100644 (file)
--- a/summarycommand.cpp
+++ b/summarycommand.cpp
@@ -445,7 +445,7 @@ vector<string> SummaryCommand::parseSharedFile(string filename) {
        }
 }
 //**********************************************************************************************************************
-string SummaryCommand::createGroupSummaryFile(int numLines, int numCols, vector<string> outputNames) {
+string SummaryCommand::createGroupSummaryFile(int numLines, int numCols, vector<string>& outputNames) {
        try {
                
                ofstream out;
@@ -501,7 +501,9 @@ string SummaryCommand::createGroupSummaryFile(int numLines, int numCols, vector<
                }       
                
                //close each groups summary file
-               for (int i=0; i<outputNames.size(); i++) {  (*(filehandles[outputNames[i]])).close();  }
+               for (int i=0; i<outputNames.size(); i++) {  (*(filehandles[outputNames[i]])).close();  remove(outputNames[i].c_str());  }
+               outputNames.clear();
+               
                out.close();
                
                //return combine file name