working on pam

[mothur.git] / subsamplecommand.h

diff --git a/subsamplecommand.h b/subsamplecommand.h
index 7bafd9bfb573a03527b95d179130fc066e9234bb..db4001a5c07337d51ea96aedfa9d3f20458b6685 100644 (file)
--- a/subsamplecommand.h
+++ b/subsamplecommand.h
@@ -40,7 +40,7 @@ public:
        
 private:       
        bool abort, pickedGroups, allLines, persample;
-       string listfile, groupfile, countfile, sharedfile, rabundfile, sabundfile, fastafile, namefile;
+       string listfile, groupfile, countfile, sharedfile, rabundfile, sabundfile, fastafile, namefile, taxonomyfile;
        set<string> labels; //holds labels to be used
        string groups, label, outputDir;
        vector<string> Groups, outputNames;
@@ -57,9 +57,10 @@ private:
        int processShared(vector<SharedRAbundVector*>&);
        int processRabund(RAbundVector*&, ofstream&);
        int processSabund(SAbundVector*&, ofstream&);
-       int processList(ListVector*&, ofstream&, set<string>&);
+       int processList(ListVector*&, set<string>&);
        int getNames();
        int readNames();
+    int getTax(set<string>&);
        
 };