parsimony calculator changed order of groups to reflect change in shared Utils made...

[mothur.git] / subsamplecommand.h

diff --git a/subsamplecommand.h b/subsamplecommand.h
index f068ac32eb975f6fa246fe654d84f56db0e33c3a..9f3e55bea25c3b47db441d618c80638b1ee2d404 100644 (file)
--- a/subsamplecommand.h
+++ b/subsamplecommand.h
@@ -32,6 +32,14 @@ public:
        void help();
        
 private:
+       
+       struct nameToBin {
+               string name;
+               int bin;
+               
+               nameToBin(string n, int b) : name(n), bin(b) {}
+       };
+       
        GlobalData* globaldata;
        
        bool abort, pickedGroups, allLines;
@@ -44,7 +52,9 @@ private:
        
        int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
        int getSubSampleShared();
+       int getSubSampleList();
        int processShared(vector<SharedRAbundVector*>&, ofstream&);
+       int processListGroup(ListVector*&, GroupMap*&, ofstream&, ofstream&);
        
 };