added cluster.split command

[mothur.git] / splitmatrix.h

diff --git a/splitmatrix.h b/splitmatrix.h
new file mode 100644 (file)
index 0000000..5974ff1
--- /dev/null
+++ b/splitmatrix.h
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+#ifndef SPLITMATRIX_H
+#define SPLITMATRIX_H
+/*
+ *  splitmatrix.h
+ *  Mothur
+ *
+ *  Created by westcott on 5/19/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "mothur.h"
+#include "mothurout.h"
+
+/******************************************************/
+
+class SplitMatrix  {
+       
+       public:
+
+               SplitMatrix(string, string, float); //column formatted distance file, namesfile, cutoff
+               ~SplitMatrix();
+               int split();
+               vector< map<string, string> > getDistanceFiles();  //returns map of distance files -> namefile sorted by distance file size
+               string getSingletonNames() { return singleton; } //returns namesfile containing singletons
+       
+       private:
+               string distFile, namefile, singleton;
+               vector< map< string, string> > dists;
+               float cutoff;
+               
+               MothurOut* m;
+};
+
+/******************************************************/
+
+#endif
+