moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / splitmatrix.h

diff --git a/splitmatrix.h b/splitmatrix.h
deleted file mode 100644 (file)
index 4ff3160..0000000
--- a/splitmatrix.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef SPLITMATRIX_H
-#define SPLITMATRIX_H
-/*
- *  splitmatrix.h
- *  Mothur
- *
- *  Created by westcott on 5/19/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "mothur.h"
-#include "mothurout.h"
-
-/******************************************************/
-
-class SplitMatrix  {
-       
-       public:
-
-               SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
-               SplitMatrix(string, string, string, float, float, string, int, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, outputDir
-               
-               ~SplitMatrix();
-               int split();
-               vector< map<string, string> > getDistanceFiles();  //returns map of distance files -> namefile sorted by distance file size
-               string getSingletonNames() { return singleton; } //returns namesfile containing singletons
-       
-       private:
-               MothurOut* m;
-
-               string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
-               vector< map< string, string> > dists;
-               float cutoff, distCutoff;
-               bool large;
-               int processors;
-                               
-               int splitDistance();
-               int splitClassify();
-               int splitDistanceLarge();
-               int splitDistanceRAM();
-               int splitNames(vector<set<string> >& groups);
-               int splitDistanceFileByTax(map<string, int>&, int);
-               int createDistanceFilesFromTax(map<string, int>&, int);
-};
-
-/******************************************************/
-
-#endif
-