cluster.split fix

[mothur.git] / splitmatrix.cpp

diff --git a/splitmatrix.cpp b/splitmatrix.cpp
index dcc5b50ef8b396d9186c755c3ba949f9c789cf64..ec71e5bfd0090b1172d50403a6b54903a030c3f4 100644 (file)
--- a/splitmatrix.cpp
+++ b/splitmatrix.cpp
@@ -77,7 +77,7 @@ int SplitMatrix::splitDistance(){
 int SplitMatrix::splitClassify(){
        try {
                cutoff = int(cutoff);
-               
+                               
                map<string, int> seqGroup;
                map<string, int>::iterator it;
                map<string, int>::iterator it2;
@@ -182,7 +182,7 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
                //process each distance file
                for (int i = 0; i < numGroups; i++) { 
                        
-                       string options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", cutoff=" + toString(distCutoff);
+                       string options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(1) + ", cutoff=" + toString(distCutoff);
                        
                        Command* command = new DistanceCommand(options);
                        command->execute();