modified split.groups to use sequenceParser

[mothur.git] / splitgroupscommand.h

diff --git a/splitgroupscommand.h b/splitgroupscommand.h
index f8bdca17e2a06877a81d4d5eca2fcabd64cef52a..a6b8854752f406a2bcaf82d5094c9abe023c2a46 100644 (file)
--- a/splitgroupscommand.h
+++ b/splitgroupscommand.h
@@ -39,14 +39,8 @@ public:
        void help() { m->mothurOut(getHelpString()); }  
        
 private:
-       int readNames(); 
-       int splitFasta(); 
-       
        vector<string> outputNames;
-       map<string, vector<string> > nameMap;
-       map<string, vector<string> >::iterator itNames;
-       GroupMap* groupMap;
-       
+               
        string outputDir, namefile, groupfile, groups, fastafile;
        vector<string> Groups;
        bool abort;