added flag to count table read so that commands that don't require the group info...

[mothur.git] / splitgroupscommand.cpp

diff --git a/splitgroupscommand.cpp b/splitgroupscommand.cpp
index 238eda55e04a3df6e43a2fae8cee5736c4f6febc..c15ba3a4d588b3eedcaca7713c6d5acb8610aee2 100644 (file)
--- a/splitgroupscommand.cpp
+++ b/splitgroupscommand.cpp
@@ -320,7 +320,7 @@ int SplitGroupCommand::runCount(){
        try {
         
         CountTable ct;
-        ct.readTable(countfile);
+        ct.readTable(countfile, true);
         if (!ct.hasGroupInfo()) { m->mothurOut("[ERROR]: your count file does not contain group info, cannot split by group.\n"); m->control_pressed = true; }
         
         if (m->control_pressed) { return 0; }