added mothurgetpid function. fixed bug with align.seqs related to g++ 4.8 change...

[mothur.git] / sparcccommand.cpp

diff --git a/sparcccommand.cpp b/sparcccommand.cpp
index a7f5d78ad37c4c515821fd4686fb769d74ecd68f..f4d08df2698cd0f01c8abae416c1b8f934761094 100644 (file)
--- a/sparcccommand.cpp
+++ b/sparcccommand.cpp
@@ -317,7 +317,7 @@ int SparccCommand::process(vector<SharedRAbundVector*>& lookup){
         cout.setf(ios::showpoint);
         
         vector<vector<float> > sharedVector;
-        vector<string> otuNames = m->currentBinLabels;
+        vector<string> otuNames = m->currentSharedBinLabels;
         
         //fill sharedVector to pass to CalcSparcc
         for (int i = 0; i < lookup.size(); i++) {
@@ -437,7 +437,7 @@ vector<vector<float> > SparccCommand::createProcesses(vector<vector<float> >& sh
                                        
                                        //pass pvalues to parent
                                        ofstream out;
-                                       string tempFile = toString(getpid()) + ".pvalues.temp";
+                                       string tempFile = m->mothurGetpid(process) + ".pvalues.temp";
                                        m->openOutputFile(tempFile, out);
                                        
                                        //pass values