added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / sortseqscommand.h

diff --git a/sortseqscommand.h b/sortseqscommand.h
index 0685d3bad74dde206fce4872fd165186f15df355..6d9c5ed8f2c6183ffdce14f52bff60da3f2316a8 100644 (file)
--- a/sortseqscommand.h
+++ b/sortseqscommand.h
@@ -25,7 +25,8 @@ public:
     vector<string> setParameters();
     string getCommandName()                    { return "sort.seqs";                           }
     string getCommandCategory()                { return "Sequence Processing";         }
-    string getHelpString();    
+    string getOutputFileNameTag(string, string);
+       string getHelpString(); 
     string getCitation() { return "http://www.mothur.org/wiki/Sort.seqs"; }
     string getDescription()            { return "puts sequences from a fasta, name, group, quality, flow or taxonomy file in the same order"; }
     
@@ -43,7 +44,6 @@ private:
     int readFlow();
     int readName();
     int readGroup();
-    int readAccnos();
     int readTax();
     int readQual();