added classify.shared command and random forest files. added count file to pcr.seqs...

[mothur.git] / sortseqscommand.h

diff --git a/sortseqscommand.h b/sortseqscommand.h
index 6d9c5ed8f2c6183ffdce14f52bff60da3f2316a8..4ba8e4294d4b7d01bc8de7ba57cef84817f718ce 100644 (file)
--- a/sortseqscommand.h
+++ b/sortseqscommand.h
@@ -36,7 +36,7 @@ public:
        
 private:
     map<string, int> names;
-    string accnosfile, fastafile, namefile, groupfile, taxfile, qualfile, flowfile, outputDir;
+    string accnosfile, fastafile, namefile, groupfile, countfile, taxfile, qualfile, flowfile, outputDir;
     bool abort, large;
     vector<string> outputNames;
     
@@ -45,6 +45,7 @@ private:
     int readName();
     int readGroup();
     int readTax();
+    int readCount();
     int readQual();
     
 };