more chimera.slayer debugging

[mothur.git] / slayer.cpp

diff --git a/slayer.cpp b/slayer.cpp
index 8e17f87b109500f34abb0aa573b263627011c19a..92b4673979197d4591b771a1011470d46f22b973 100644 (file)
--- a/slayer.cpp
+++ b/slayer.cpp
@@ -34,7 +34,7 @@ string Slayer::getResults(Sequence* query, vector<Sequence*> refSeqs) {
                                vector<data_struct> divs = runBellerophon(q, leftParent, rightParent, spots);
        
                                if (m->control_pressed) { delete q; delete leftParent; delete rightParent; return "no"; }
-                                       
+//                             cout << "examining:\t" << refSeqs[i]->getName() << '\t' << refSeqs[j]->getName() << endl;
                                vector<data_struct> selectedDivs;
                                for (int k = 0; k < divs.size(); k++) {
                                        
@@ -46,6 +46,7 @@ string Slayer::getResults(Sequence* query, vector<Sequence*> refSeqs) {
                                        int numSNPSLeft = snpsLeft.size();
                                        int numSNPSRight = snpsRight.size();
                                        
+//                                     cout << numSNPSLeft << '\t' << numSNPSRight << endl;
                                        //require at least 4 SNPs on each side of the break
                                        if ((numSNPSLeft >= 4) && (numSNPSRight >= 4)) {