added countable class to read and store count file. added count parameter to make...

[mothur.git] / singlelinkage.cpp

diff --git a/singlelinkage.cpp b/singlelinkage.cpp
index fe5adca04ac1659cf88ac3c8df311aeead91709c..1a1b2aee36bed8af6b7d9782e54adcdedc04d466 100644 (file)
--- a/singlelinkage.cpp
+++ b/singlelinkage.cpp
@@ -18,7 +18,7 @@ string SingleLinkage::getTag() {
 
 /***********************************************************************/
 //This function clusters based on the single linkage method.
-void  SingleLinkage::update(){
+void  SingleLinkage::update(double& cutOFF){
        try {
                getRowColCells();       
        
@@ -77,6 +77,7 @@ void  SingleLinkage::update(){
                clusterBins();
                clusterNames();
                // remove also the cell with the smallest distance
+
                removeCell(rowCells[rowInd], -1 , -1);
        }
        catch(exception& e) {