changed added group output to indicator command. a few changes to work with the guy

[mothur.git] / shhhseqscommand.h

diff --git a/shhhseqscommand.h b/shhhseqscommand.h
index 7174ac70caf3f55e146d1cdf09e2b15e5b0cfaf4..85be58c307e8a425e9ac4de4b7c2a99e3fe201d7 100644 (file)
--- a/shhhseqscommand.h
+++ b/shhhseqscommand.h
@@ -29,8 +29,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "shhh.seqs";   }
        string getCommandCategory()             { return "Sequence Processing";         }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Shhh.seqs"; }
+       string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nQuince C, Lanzen A, Davenport RJ, Turnbaugh PJ (2011).  Removing noise from pyrosequenced amplicons.  BMC Bioinformatics  12:38.\nhttp://www.mothur.org/wiki/Shhh.seqs"; }
        string getDescription()         { return "shhh.seqs"; }