shhh.seqs and trim.flows modifications.

[mothur.git] / shhhercommand.h

diff --git a/shhhercommand.h b/shhhercommand.h
index 650bf8cbe41e30c1307e9b7b180186d7a87c823f..9e50824b05f9c70a151a903b8119ba09c447b963 100644 (file)
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -33,7 +33,8 @@ private:
        int abort;
        map<string, vector<string> > outputTypes;
        
-       string outputDir, flowFileName, flowFilesFileName, lookupFileName;
+       string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName;
+
        int processors, maxIters;
        float cutoff, sigma, minDelta;