removed read.dist, read.otu, read.tree and globaldata. added current to defaults...

[mothur.git] / shhhercommand.h

diff --git a/shhhercommand.h b/shhhercommand.h
index 51a5c3cc46fcad5ab70393bc0e153ffe6715b121..8d29d86e0ec606379e471a363dbe33af34336d8e 100644 (file)
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -12,26 +12,25 @@
 
 #include "mothur.h"
 #include "command.hpp"
-#include "globaldata.hpp"
+
 
 class ShhherCommand : public Command {
        
 public:
        ShhherCommand(string);
        ShhherCommand();
-       ~ShhherCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help();
+       ~ShhherCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "shhh.seqs";   }
+       string getCommandCategory()             { return "Hidden";              }
+       string getHelpString(); 
        
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }          
 private:
-       GlobalData* globaldata;
        
        int abort;
-       map<string, vector<string> > outputTypes;
        
        string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName;