modified shhhercommand to make buildable with windows

[mothur.git] / shhhercommand.cpp

diff --git a/shhhercommand.cpp b/shhhercommand.cpp
index 63df681923c0a91e87c3507f861fcd519253f332..ffddb8cfc9de4dd92feb4966dd8d31477e1363fa 100644 (file)
--- a/shhhercommand.cpp
+++ b/shhhercommand.cpp
@@ -838,7 +838,7 @@ void ShhherCommand::getJointLookUp(){
                for(int i=0;i<NUMBINS;i++){
                        for(int j=0;j<NUMBINS;j++){             
                                
-                               double minSum = 10000000000;
+                               double minSum = 100000000;
                                
                                for(int k=0;k<HOMOPS;k++){
                                        double sum = singleLookUp[k * NUMBINS + i] + singleLookUp[k * NUMBINS + j];
@@ -857,9 +857,11 @@ void ShhherCommand::getJointLookUp(){
 
 /**************************************************************************************************/
 
-float ShhherCommand::getProbIntensity(int intIntensity){                          
+double ShhherCommand::getProbIntensity(int intIntensity){                          
        try{
-               double minNegLogProb = 10000000000; 
+
+               double minNegLogProb = 100000000; 
+
                
                for(int i=0;i<HOMOPS;i++){//loop signal strength
                        float negLogProb = singleLookUp[i * NUMBINS + intIntensity];