1.23.0

[mothur.git] / shhhercommand.cpp

diff --git a/shhhercommand.cpp b/shhhercommand.cpp
index 13e7ccfd496d035c151eaade308f9832af76b511..e266b98837f4a787975319c7e098904cae552209 100644 (file)
--- a/shhhercommand.cpp
+++ b/shhhercommand.cpp
@@ -251,19 +251,19 @@ ShhherCommand::ShhherCommand(string option) {
                        
                        temp = validParameter.validFile(parameters, "processors", false);       if (temp == "not found"){       temp = m->getProcessors();      }
                        m->setProcessors(temp);
-                       convert(temp, processors);
+                       m->mothurConvert(temp, processors);
 
                        temp = validParameter.validFile(parameters, "cutoff", false);   if (temp == "not found"){       temp = "0.01";          }
-                       convert(temp, cutoff); 
+                       m->mothurConvert(temp, cutoff); 
                        
                        temp = validParameter.validFile(parameters, "mindelta", false); if (temp == "not found"){       temp = "0.000001";      }
-                       convert(temp, minDelta); 
+                       m->mothurConvert(temp, minDelta); 
 
                        temp = validParameter.validFile(parameters, "maxiter", false);  if (temp == "not found"){       temp = "1000";          }
-                       convert(temp, maxIters); 
+                       m->mothurConvert(temp, maxIters); 
 
                        temp = validParameter.validFile(parameters, "sigma", false);if (temp == "not found")    {       temp = "60";            }
-                       convert(temp, sigma); 
+                       m->mothurConvert(temp, sigma); 
                        
                        flowOrder = validParameter.validFile(parameters, "order", false);
                        if (flowOrder == "not found"){ flowOrder = "TACG";              }