fixed shhh.flows outputdir bug

[mothur.git] / shhhercommand.cpp

diff --git a/shhhercommand.cpp b/shhhercommand.cpp
index 32891c333ab5229aec50ed05ff5f03b6799d1396..d00ead8476ed226043b781edf680ac53a90e9a69 100644 (file)
--- a/shhhercommand.cpp
+++ b/shhhercommand.cpp
@@ -1734,7 +1734,7 @@ void ShhherCommand::writeSequences(vector<int> otuCounts){
         outputNames.push_back(fastaFileName);
         
         if(compositeFASTAFileName != ""){
-            m->appendFiles(fastaFileName, compositeFASTAFileName);
+            m->appendFiles(fastaFileName, thisOutputDir + compositeFASTAFileName);
         }
     }
     catch(exception& e) {
@@ -1772,7 +1772,7 @@ void ShhherCommand::writeNames(vector<int> otuCounts){
         
         
         if(compositeNamesFileName != ""){
-            m->appendFiles(nameFileName, compositeNamesFileName);
+            m->appendFiles(nameFileName, thisOutputDir + compositeNamesFileName);
         }              
     }
     catch(exception& e) {