moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / shen.cpp

diff --git a/shen.cpp b/shen.cpp
deleted file mode 100644 (file)
index dac12bd..0000000
--- a/shen.cpp
+++ /dev/null
@@ -1,42 +0,0 @@
-/*
- *  shen.cpp
- *  Mothur
- *
- *  Created by Thomas Ryabin on 5/18/09.
- *  Copyright 2009Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "shen.h"
-#include "ace.h"
-
-       
-/***********************************************************************/      
-EstOutput Shen::getValues(SAbundVector* rank){
-
-       try {
-               
-               data.resize(1,0);
-               
-               double n = (double)rank->getNumSeqs();
-               double f1 = (double)rank->get(1);
-               
-               Ace* calc = new Ace(abund);
-               EstOutput ace = calc->getValues(rank);
-               
-               double f0 = ace[0]-rank->getNumBins();
-               
-               data[0] = f0 * (1 - pow(1 - f1/n/f0, f));
-               
-               delete calc;
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "Shen", "getValues");
-               exit(1);
-       }
-}
-
-
-/***********************************************************************/