moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedutilities.h

diff --git a/sharedutilities.h b/sharedutilities.h
deleted file mode 100644 (file)
index df7e8d3..0000000
--- a/sharedutilities.h
+++ /dev/null
@@ -1,41 +0,0 @@
-#ifndef SHAREDUTIL_H
-#define SHAREDUTIL_H
-/*
- *  sharedutilities.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 4/9/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "mothurout.h"
-
-class SharedRAbundVector;
-class SharedOrderVector;
-
-/**************************************************************************************************/
-
-class SharedUtil {
-       public:
-               SharedUtil() { m = MothurOut::getInstance(); }
-               ~SharedUtil() {};
-               
-               void getSharedVectors(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
-               void getSharedVectorswithReplacement(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
-               void setGroups(vector<string>&, vector<string>&);  //globaldata->Groups, your tree or group map
-               void setGroups(vector<string>&, vector<string>&, string);  //globaldata->Groups, your tree or group map, mode
-               void setGroups(vector<string>&, vector<string>&, string&, int&, string);  //globaldata->Groups, your tree or group map, allgroups, numGroups, mode
-               void getCombos(vector<string>&, vector<string>, int&); //groupcomb, globaldata->Groups, numcomb
-               void updateGroupIndex(vector<string>&, map<string, int>&); //globaldata->Groups, groupmap->groupIndex
-               bool isValidGroup(string, vector<string>);
-               
-       private:
-               MothurOut* m;
-               
-};
-
-/**************************************************************************************************/
-
-#endif