changes while testing

[mothur.git] / sharedutilities.cpp

diff --git a/sharedutilities.cpp b/sharedutilities.cpp
index 151b254c7ca983abe1568a962aba5eef0e2f5ead..d9891db7966da9178ce0b0deaa177ddeb192fc79 100644 (file)
--- a/sharedutilities.cpp
+++ b/sharedutilities.cpp
@@ -22,7 +22,9 @@ void SharedUtil::getSharedVectors(vector<string> Groups, vector<SharedRAbundVect
                }
                
                lookup.clear();
-               
+        
+               sort(Groups.begin(), Groups.end());
+        
                //create and initialize vector of sharedvectors, one for each group
                for (int i = 0; i < Groups.size(); i++) { 
                        SharedRAbundVector* temp = new SharedRAbundVector(order->getNumBins());
@@ -120,7 +122,7 @@ void SharedUtil::setGroups(vector<string>& userGroups, vector<string>& allGroups
                                
                                //if the user only entered invalid groups
                                if (userGroups.size() == 0) { 
-                                       m->mothurOut("You provided no valid groups. I will run the command using all the groups in your groupfile."); m->mothurOutEndLine();
+                                       m->mothurOut("You provided no valid groups. I will run the command using all the groups in your file."); m->mothurOutEndLine();
                                        for (int i = 0; i < allGroups.size(); i++) {
                                                userGroups.push_back(allGroups[i]);
                                        }