added count file to get.groups and remove.groups. added shortcut parameter to classif...

[mothur.git] / sharedutilities.cpp

diff --git a/sharedutilities.cpp b/sharedutilities.cpp
index 151b254c7ca983abe1568a962aba5eef0e2f5ead..71d7782cad87c7914c2d14071ec1cc657b2803d1 100644 (file)
--- a/sharedutilities.cpp
+++ b/sharedutilities.cpp
@@ -120,7 +120,7 @@ void SharedUtil::setGroups(vector<string>& userGroups, vector<string>& allGroups
                                
                                //if the user only entered invalid groups
                                if (userGroups.size() == 0) { 
-                                       m->mothurOut("You provided no valid groups. I will run the command using all the groups in your groupfile."); m->mothurOutEndLine();
+                                       m->mothurOut("You provided no valid groups. I will run the command using all the groups in your file."); m->mothurOutEndLine();
                                        for (int i = 0; i < allGroups.size(); i++) {
                                                userGroups.push_back(allGroups[i]);
                                        }