moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedsorest.cpp

diff --git a/sharedsorest.cpp b/sharedsorest.cpp
deleted file mode 100644 (file)
index b9ab050..0000000
--- a/sharedsorest.cpp
+++ /dev/null
@@ -1,59 +0,0 @@
-/*
- *  sharedsorest.cpp
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedsorest.h"
-#include "chao1.h"
-#include "sharedchao1.h"
-
-/***********************************************************************/
-
-EstOutput SorEst::getValues(vector<SharedRAbundVector*> shared) {
-       try {
-               EstOutput S1, S2, S12;
-               S12.resize(1,0);
-               S1.resize(3,0);
-               S2.resize(3,0); 
-               
-               /*S1, S2 = number of OTUs estimated in A and B using the Chao estimator
-               S12 = estimated number of OTUs shared between A and B using the SharedChao estimator*/
-
-               data.resize(1,0);
-               
-               SharedChao1* sharedChao = new SharedChao1();
-               Chao1* chaoS1 = new Chao1();
-               Chao1* chaoS2 = new Chao1();
-               SAbundVector* chaoS1Sabund = new SAbundVector();
-               SAbundVector* chaoS2Sabund = new SAbundVector();
-               
-               *chaoS1Sabund = shared[0]->getSAbundVector();
-               *chaoS2Sabund = shared[1]->getSAbundVector();
-               
-               S12 = sharedChao->getValues(shared);
-               S1 = chaoS1->getValues(chaoS1Sabund);
-               S2 = chaoS2->getValues(chaoS2Sabund);
-               
-               data[0] = 1.0-(2 * S12[0]) / (float)(S1[0] + S2[0]);
-                
-               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-               
-               delete sharedChao;
-               delete chaoS1;
-               delete chaoS2;
-               delete chaoS1Sabund;
-               delete chaoS2Sabund;
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "SorEst", "getValues");
-               exit(1);
-       }
-}
-
-/***********************************************************************/