fixes while testing 1.33.0

[mothur.git] / sharedsobs.cpp

diff --git a/sharedsobs.cpp b/sharedsobs.cpp
index 388356ea927c02cee168918026115c010c6d705f..f9b5eddcd919acdd409c9b0792294034dbcb7391 100644 (file)
--- a/sharedsobs.cpp
+++ b/sharedsobs.cpp
@@ -16,10 +16,10 @@
 EstOutput SharedSobs::getValues(vector<SharedRAbundVector*> shared){
        try {
                data.resize(1,0);
-               int observed = 0;
+               double observed = 0;
 
                //loop through the species in each group
-               for (int k = 0; k < shared[0]->size(); k++) {
+               for (int k = 0; k < shared[0]->getNumBins(); k++) {
                        //if you have found a new species
                        if (shared[0]->getAbundance(k) != 0) { observed++; } 
                        else if ((shared[0]->getAbundance(k) == 0) && (shared[1]->getAbundance(k) != 0)) { observed++; }
@@ -29,13 +29,9 @@ EstOutput SharedSobs::getValues(vector<SharedRAbundVector*> shared){
                return data;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the SharedSobs class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               m->errorOut(e, "SharedSobs", "getValues");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the SharedSobs class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/