moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedsobs.cpp

diff --git a/sharedsobs.cpp b/sharedsobs.cpp
deleted file mode 100644 (file)
index f9b5edd..0000000
--- a/sharedsobs.cpp
+++ /dev/null
@@ -1,37 +0,0 @@
-/*
- *  sharedsobs.cpp
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/7/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedsobs.h"
-
-/***********************************************************************/
-//This returns the number of unique species observed in several groups.  
-//The shared vector is each groups sharedrabundvector.
-
-EstOutput SharedSobs::getValues(vector<SharedRAbundVector*> shared){
-       try {
-               data.resize(1,0);
-               double observed = 0;
-
-               //loop through the species in each group
-               for (int k = 0; k < shared[0]->getNumBins(); k++) {
-                       //if you have found a new species
-                       if (shared[0]->getAbundance(k) != 0) { observed++; } 
-                       else if ((shared[0]->getAbundance(k) == 0) && (shared[1]->getAbundance(k) != 0)) { observed++; }
-               }
-
-               data[0] = observed;
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "SharedSobs", "getValues");
-               exit(1);
-       }
-}
-
-/***********************************************************************/