moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedsabundvector.h

diff --git a/sharedsabundvector.h b/sharedsabundvector.h
deleted file mode 100644 (file)
index cd78a2e..0000000
--- a/sharedsabundvector.h
+++ /dev/null
@@ -1,69 +0,0 @@
-#ifndef SHAREDSABUND_H
-#define SHAREDSABUND_H
-
-
-/*
- *  sharedSharedSAbundVector.h
- *  Dotur
- *
- *  Created by Sarah Westcott on 12/10/08.
- *  Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "datavector.hpp"
-#include "rabundvector.hpp"
-#include "ordervector.hpp"
-#include "sharedordervector.h"
-#include "sharedrabundvector.h"
-
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
-       It is similiar to an sabundvector except each member of data knows which group it belongs to.
-       Each member of the internal container "data" is a struct of type individual. 
-       An individual which knows the OTU from which it came, 
-       the group it is in and its abundance.  */
-
-
-class SharedSAbundVector : public DataVector {
-       
-public:
-       SharedSAbundVector();
-       SharedSAbundVector(int);
-       SharedSAbundVector(const SharedSAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
-       ~SharedSAbundVector(){};
-
-       int getNumBins();       
-       int getNumSeqs();       
-       int getMaxRank();       
-       string getGroup();
-       void setGroup(string);  
-       
-       void set(int, int, string);      //OTU, abundance, group
-       individual get(int);
-       int getAbundance(int);
-       void push_back(int, int, string);       //abundance, OTU, group
-       void pop_back();
-       void resize(int);
-       int size();
-       void clear();
-
-       void print(ostream&);
-               
-       RAbundVector getRAbundVector(); 
-       SAbundVector getSAbundVector();
-       OrderVector getOrderVector(map<string,int>*);
-       SharedSAbundVector getSharedSAbundVector();
-       SharedRAbundVector getSharedRAbundVector();
-       SharedOrderVector getSharedOrderVector();
-       
-private:
-       vector<individual> data;
-       
-       int maxRank;
-       int numBins;
-       int numSeqs;
-       string group;
-};
-
-#endif
-