added the Calculators Thomas made in the fall. Added parameter and command error...

[mothur.git] / sharedrabundvector.h

diff --git a/sharedrabundvector.h b/sharedrabundvector.h
index 41a5798ed295489a0d786fd52a400407104e8a6a..92f71cdd75eca67df59f1f5cc548e61fe162b41e 100644 (file)
--- a/sharedrabundvector.h
+++ b/sharedrabundvector.h
@@ -30,7 +30,7 @@ public:
        SharedRAbundVector(int);
        //SharedRAbundVector(string, vector<int>);
        SharedRAbundVector(const SharedRAbundVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs){};
-//     SharedRAbundVector(ifstream&);
+    //SharedRAbundVector(ifstream&);
        ~SharedRAbundVector();
 
        int getNumBins();               
@@ -42,8 +42,12 @@ public:
        void setGroupIndex(int);                                                                
 
        void set(int, int, string);                     //OTU, abundance, groupname
+       void setData(vector <individual>);
        individual get(int);
+       vector <individual> getData();
        int getAbundance(int);
+       int numNZ();
+       void sortD();  //Sorts the data in descending order.
        void push_back(int, int, string);  //abundance, OTU, groupname
        void pop_back();
        void resize(int);
@@ -54,6 +58,7 @@ public:
        void print(ostream&);
                
        RAbundVector getRAbundVector();
+       RAbundVector getRAbundVector2();
        SAbundVector getSAbundVector();
        OrderVector getOrderVector(map<string,int>*);
        SharedOrderVector getSharedOrderVector();