started shared utilities, updates to venn and heatmap added tree.groups command

[mothur.git] / sharedrabundvector.cpp

diff --git a/sharedrabundvector.cpp b/sharedrabundvector.cpp
index 3d6a2debbc05540cb5d4cb38cba1dab5638c7346..4683c59b63050de20e6bb79e2103563478066a71 100644 (file)
--- a/sharedrabundvector.cpp
+++ b/sharedrabundvector.cpp
@@ -11,10 +11,8 @@
 using namespace std;
 
 #include "sharedrabundvector.h" 
-#include "utilities.hpp"
 #include "sabundvector.hpp"
 #include "ordervector.hpp"
-#include <algorithm>
 
 
 /***********************************************************************/
@@ -186,6 +184,33 @@ void SharedRAbundVector::push_back(int binSize, int otu, string groupName){
        }
 }
 
+/***********************************************************************/
+
+void SharedRAbundVector::insert(int binSize, int otu, string groupName){
+       try {
+               individual newGuy;
+               newGuy.abundance = binSize;
+               newGuy.group = groupName;
+               newGuy.bin = otu;
+               
+               data.insert(data.begin()+otu, newGuy);
+               numBins++;
+       
+               if(binSize > maxRank){
+                       maxRank = binSize;
+               }
+       
+               numSeqs += binSize;
+       }
+       catch(exception& e) {
+               cout << "Standard Error: " << e.what() << " has occurred in the SharedRAbundVector class Function insert. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               exit(1);
+       }
+       catch(...) {
+               cout << "An unknown error has occurred in the SharedRAbundVector class function insert. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               exit(1);
+       }
+}
 
 /***********************************************************************/