adding labels to list file.

[mothur.git] / sharedrabundvector.cpp

diff --git a/sharedrabundvector.cpp b/sharedrabundvector.cpp
index 9b2bb678ca7688777aa87a9f60015baba5d336d9..0f2e48e8ac7bbdc18b10f15f1b764aed7ee58890 100644 (file)
--- a/sharedrabundvector.cpp
+++ b/sharedrabundvector.cpp
@@ -86,13 +86,13 @@ SharedRAbundVector::SharedRAbundVector(ifstream& f) : DataVector(), maxRank(0),
                                
                                //parse labels to save
                                istringstream iStringStream(label);
-                               m->binLabelsInFile.clear();
+                               m->sharedBinLabelsInFile.clear();
                                while(!iStringStream.eof()){
                                        if (m->control_pressed) { break; }
                                        string temp;
                                        iStringStream >> temp;  m->gobble(iStringStream);
                
-                                       m->binLabelsInFile.push_back(temp);
+                                       m->sharedBinLabelsInFile.push_back(temp);
                                }
                                
                                f >> label >> groupN >> num;
@@ -102,7 +102,7 @@ SharedRAbundVector::SharedRAbundVector(ifstream& f) : DataVector(), maxRank(0),
                 
                 //make binlabels because we don't have any
                 string snumBins = toString(num);
-                m->binLabelsInFile.clear();
+                m->sharedBinLabelsInFile.clear();
                 for (int i = 0; i < num; i++) {  
                     //if there is a bin label use it otherwise make one
                     string binLabel = "Otu";
@@ -112,7 +112,7 @@ SharedRAbundVector::SharedRAbundVector(ifstream& f) : DataVector(), maxRank(0),
                         for (int h = 0; h < diff; h++) { binLabel += "0"; }
                     }
                     binLabel += sbinNumber;
-                    m->binLabelsInFile.push_back(binLabel);
+                    m->sharedBinLabelsInFile.push_back(binLabel);
                 }
             }
                }else { 
@@ -125,7 +125,7 @@ SharedRAbundVector::SharedRAbundVector(ifstream& f) : DataVector(), maxRank(0),
         }
                
                //reset labels, currentLabels may have gotten changed as otus were eliminated because of group choices or sampling
-               m->currentBinLabels = m->binLabelsInFile;
+               m->currentSharedBinLabels = m->sharedBinLabelsInFile;
                
                holdLabel = label;
                
@@ -385,7 +385,7 @@ void SharedRAbundVector::printHeaders(ostream& output){
                                        for (int h = 0; h < diff; h++) { binLabel += "0"; }
                                }
                                binLabel += sbinNumber;
-                               if (i < m->currentBinLabels.size()) {  binLabel = m->currentBinLabels[i]; }
+                               if (i < m->currentSharedBinLabels.size()) {  binLabel = m->currentSharedBinLabels[i]; }
                                
                                output << binLabel << '\t'; 
                        }
@@ -400,14 +400,14 @@ void SharedRAbundVector::printHeaders(ostream& output){
                                        for (int h = 0; h < diff; h++) { binLabel += "0"; }
                                }
                                binLabel += sbinNumber;
-                               if (i < m->currentBinLabels.size()) {  binLabel = m->currentBinLabels[i]; }
+                               if (i < m->currentSharedBinLabels.size()) {  binLabel = m->currentSharedBinLabels[i]; }
                                
                                output << binLabel << '\t'; 
                        }
                        
                        output << endl;
                }
-               m->printedHeaders = true;
+               m->printedSharedHeaders = true;
        }
        catch(exception& e) {
                m->errorOut(e, "SharedRAbundVector", "printHeaders");
@@ -533,7 +533,7 @@ int SharedRAbundVector::eliminateZeroOTUS(vector<SharedRAbundVector*>& thislooku
                                                for (int h = 0; h < diff; h++) { binLabel += "0"; }
                                        }
                                        binLabel += sbinNumber; 
-                                       if (i < m->currentBinLabels.size()) {  binLabel = m->currentBinLabels[i]; }
+                                       if (i < m->currentSharedBinLabels.size()) {  binLabel = m->currentSharedBinLabels[i]; }
                                        
                                        newBinLabels.push_back(binLabel);
                                }
@@ -542,7 +542,7 @@ int SharedRAbundVector::eliminateZeroOTUS(vector<SharedRAbundVector*>& thislooku
                        for (int j = 0; j < thislookup.size(); j++) {  delete thislookup[j];  }
                        
                        thislookup = newLookup;
-                       m->currentBinLabels = newBinLabels;
+                       m->currentSharedBinLabels = newBinLabels;
                        
                        return 0;