changed random forest output filename

[mothur.git] / sharedochiai.cpp

diff --git a/sharedochiai.cpp b/sharedochiai.cpp
index 744fb1c2a4b119561bd4756b98ed39483b2c89d1..b49fa4a3cc5730b0a97b0eefe30f952a7671f932 100644 (file)
--- a/sharedochiai.cpp
+++ b/sharedochiai.cpp
@@ -13,7 +13,7 @@
 
 EstOutput Ochiai::getValues(vector<SharedRAbundVector*> shared) {
        try {
-               int S1, S2, S12, tempA, tempB;
+               double S1, S2, S12, tempA, tempB;
                S1 = 0; S2 = 0; S12 = 0; tempA = 0; tempB = 0; 
                
                /*S1, S2 = number of OTUs observed or estimated in A and B 
@@ -21,7 +21,7 @@ EstOutput Ochiai::getValues(vector<SharedRAbundVector*> shared) {
 
                data.resize(1,0);
                
-               for (int i = 0; i < shared[0]->size(); i++) {
+               for (int i = 0; i < shared[0]->getNumBins(); i++) {
                        //store in temps to avoid multiple repetitive function calls
                        tempA = shared[0]->getAbundance(i);
                        tempB = shared[1]->getAbundance(i);
@@ -40,13 +40,9 @@ EstOutput Ochiai::getValues(vector<SharedRAbundVector*> shared) {
                return data;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Ochiai class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               m->errorOut(e, "Ochiai", "getValues");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Ochiai class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/