moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedmorisitahorn.cpp

diff --git a/sharedmorisitahorn.cpp b/sharedmorisitahorn.cpp
deleted file mode 100644 (file)
index 16a7590..0000000
--- a/sharedmorisitahorn.cpp
+++ /dev/null
@@ -1,56 +0,0 @@
-/*
- *  sharedmorisitahorn.cpp
- *  Mothur
- *
- *  Created by Sarah Westcott on 3/24/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedmorisitahorn.h"
-
-/***********************************************************************/
-EstOutput MorHorn::getValues(vector<SharedRAbundVector*> shared) {
-       try {   
-               data.resize(1,0);
-               
-               double Atotal, Btotal, tempA, tempB;
-               Atotal = 0; Btotal = 0; 
-               double  morhorn, sumSharedA, sumSharedB, a, b, d;
-               morhorn = 0.0; sumSharedA = 0.0; sumSharedB = 0.0; a = 0.0; b = 0.0; d = 0.0;
-               
-               //get the total values we need to calculate the theta denominator sums
-               for (int i = 0; i < shared[0]->getNumBins(); i++) {
-                       //store in temps to avoid multiple repetitive function calls
-                       Atotal += shared[0]->getAbundance(i);
-                       Btotal += shared[1]->getAbundance(i);
-               }
-               
-               //calculate the denominator sums
-               for (int j = 0; j < shared[0]->getNumBins(); j++) {
-                       //store in temps to avoid multiple repetitive function calls
-                       tempA = shared[0]->getAbundance(j);
-                       tempB = shared[1]->getAbundance(j);
-                       float relA = tempA / Atotal;
-                       float relB = tempB / Btotal;
-                       
-                       a += relA * relA;
-                       b += relB * relB;
-                       d += relA * relB;
-               }
-
-               morhorn = 1- (2 * d) / (a + b);
-
-               if (isnan(morhorn) || isinf(morhorn)) { morhorn = 1; }
-               
-               data[0] = morhorn;
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "MorHorn", "getValues");
-               exit(1);
-       }
-}
-
-/***********************************************************************/