moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedmarczewski.cpp

diff --git a/sharedmarczewski.cpp b/sharedmarczewski.cpp
deleted file mode 100644 (file)
index 57de5f5..0000000
--- a/sharedmarczewski.cpp
+++ /dev/null
@@ -1,46 +0,0 @@
-/*
- *  sharedmarczewski.cpp
- *  Mothur
- *
- *  Created by Thomas Ryabin on 4/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedmarczewski.h"
-
-EstOutput SharedMarczewski::getValues(vector<SharedRAbundVector*> vectorShared){
-       try {
-               SharedRAbundVector* shared1 = vectorShared[0];
-               SharedRAbundVector* shared2 = vectorShared[1];
-               
-               data.resize(1,0);
-               
-               double a = 0;
-               double b = 0;
-               double c = 0;
-               for(int i = 1; i < shared1->size(); i++)
-               {
-                       int abund1 = shared1->get(i).abundance;
-                       int abund2 = shared2->get(i).abundance;
-                       
-                       if(abund1 > 0 && abund2 > 0)
-                               a++;
-                       else if(abund1 > 0 && abund2 == 0)
-                               b++;
-                       else if(abund1 == 0 && abund2 > 0)
-                               c++;
-               }
-               data[0] = (b+c)/(a+b+c);
-
-               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "SharedMarczewski", "getValues");
-               exit(1);
-       }
-}
-
-/***********************************************************************/