moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedlistvector.h

diff --git a/sharedlistvector.h b/sharedlistvector.h
deleted file mode 100644 (file)
index 56ea802..0000000
--- a/sharedlistvector.h
+++ /dev/null
@@ -1,67 +0,0 @@
-#ifndef SHAREDLIST_H
-#define SHAREDLIST_H
-
-/*
- *  sharedlistvector.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 1/22/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "datavector.hpp"
-#include "groupmap.h"
-#include "sharedrabundvector.h"
-#include "sharedsabundvector.h"
-
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
-       A sharedlistvector can be converted into a sharedordervector, sharedrabundvector or sharedsabundvectorand 
-       as well as an ordervector, rabundvector or sabundvector.
-       Each member of the internal container "data" represents an individual OTU.
-       Each individual in the OTU belongs to a group.
-       So data[0] = "a,b,c,d,e,f".
-       example: listvector             =       a,b,c,d,e,f             g,h,i           j,k             l               m  
-                        rabundvector   =       6                               3                       2               1               1
-                        sabundvector   =       2               1               1               0               0               1
-                        ordervector    =       1       1       1       1       1       1       2       2       2       3       3       4       5 */
-
-class SharedListVector : public DataVector {
-       
-public:
-       SharedListVector();
-       SharedListVector(int);
-       SharedListVector(ifstream&);
-       SharedListVector(const SharedListVector& lv) : DataVector(lv.label), data(lv.data), maxRank(lv.maxRank), numBins(lv.numBins), numSeqs(lv.numSeqs){ groupmap = NULL; };
-       ~SharedListVector(){ if (groupmap != NULL) { delete groupmap; } };
-       
-       int getNumBins()                                                        {       return numBins;         }
-       int getNumSeqs()                                                        {       return numSeqs;         }
-       int getMaxRank()                                                        {       return maxRank;         }
-
-       void set(int, string);  
-       string get(int);
-       void push_back(string);
-       void resize(int);
-       void clear();
-       int size();
-       void print(ostream&);
-       
-       RAbundVector getRAbundVector();
-       SAbundVector getSAbundVector();
-       OrderVector getOrderVector(map<string,int>*);
-       SharedOrderVector* getSharedOrderVector();
-       SharedRAbundVector getSharedRAbundVector(string);  //get sharedrabundvector for a certain group
-       SharedSAbundVector getSharedSAbundVector(string);                       //get sharedsabundvector for a certain group
-       vector<SharedRAbundVector*> getSharedRAbundVector(); //returns sharedRabundVectors for all the users groups
-       
-private:
-       vector<string> data;  //data[i] is a list of names of sequences in the ith OTU.
-       GroupMap* groupmap;
-       int maxRank;
-       int numBins;
-       int numSeqs;
-
-};
-
-#endif