fixed bug with getting sharedrabunds for venn, heatmap and tree.shared commands,...

[mothur.git] / sharedlistvector.cpp

diff --git a/sharedlistvector.cpp b/sharedlistvector.cpp
index b5624508ac792aa82d367ed04ed1fbaf571d4cd6..02c012e797e47efe6e509c7bdd62bd79fa3e390d 100644 (file)
--- a/sharedlistvector.cpp
+++ b/sharedlistvector.cpp
@@ -234,6 +234,7 @@ SharedOrderVector* SharedListVector::getSharedOrderVector(){
                        groupName = groupmap->getGroup(names);
                        order->push_back(i, binSize, groupName);
                }
+
                random_shuffle(order->begin(), order->end());
                return order;
        }
@@ -293,8 +294,13 @@ vector<SharedRAbundVector*> SharedListVector::getSharedRAbundVector() {
                vector<SharedRAbundVector*> lookup;
                
                util->setGroups(globaldata->Groups, globaldata->gGroupmap->namesOfGroups);
-               util->getSharedVectors(globaldata->Groups, lookup, this->getSharedOrderVector());
-               
+
+               for (int i = 0; i < globaldata->Groups.size(); i++) {
+                       SharedRAbundVector* temp = new SharedRAbundVector();
+                       *temp = getSharedRAbundVector(globaldata->Groups[i]);
+                       lookup.push_back(temp);
+               }
+
                return lookup;
        }
        catch(exception& e) {