changed random forest output filename

[mothur.git] / sharedlennon.cpp

diff --git a/sharedlennon.cpp b/sharedlennon.cpp
index 0c0f833f33ff83299237b8b03cc9e28174f2c224..52192756e00cbb5487e1baa9988c1ba0c709ed5a 100644 (file)
--- a/sharedlennon.cpp
+++ b/sharedlennon.cpp
@@ -21,7 +21,7 @@ EstOutput Lennon::getValues(vector<SharedRAbundVector*> shared) {
 
                data.resize(1,0);
                
-               for (int i = 0; i < shared[0]->size(); i++) {
+               for (int i = 0; i < shared[0]->getNumBins(); i++) {
                        //store in temps to avoid multiple repetitive function calls
                        tempA = shared[0]->getAbundance(i);
                        tempB = shared[1]->getAbundance(i);
@@ -39,7 +39,7 @@ EstOutput Lennon::getValues(vector<SharedRAbundVector*> shared) {
                if (tempA < tempB) { min = tempA; }
                else { min = tempB; }
                
-               data[0] = S12 / (float)(S12 + min);
+               data[0] = 1.0 - S12 / (float)(S12 + min);
                
                if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }