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[mothur.git] / sharedjackknife.h

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+#ifndef SHAREDJACKKNIFE_H
+#define SHAREDJACKKNIFE_H
+
+/*
+ *  sharedjackknife.h
+ *  Mothur
+ *
+ *  Created by Thomas Ryabin on 3/30/09.
+ *  Copyright 2009 __MyCompanyName__. All rights reserved.
+ *
+ */
+
+#include "calculator.h"
+#include "globaldata.hpp"
+
+/*This class implements the SharedJackknife estimator. 
+It is a child of the calculator class.*/ 
+
+/***********************************************************************/
+
+class SharedJackknife : public Calculator  {
+       
+public:
+       SharedJackknife() : numGroups(-1), callCount(0), count(0), currentCallDone(true), Calculator("sharedjackknife", 3, false) {};
+       EstOutput getValues(SAbundVector*) {return data;};
+       EstOutput getValues(vector<SharedRAbundVector*>);
+       
+private:
+       GlobalData* globaldata;
+       int numGroups, callCount, count;
+       bool currentCallDone;
+       vector<SharedRAbundVector*> groups;
+       double simpson(int[], double, int);
+       double* jackknife();
+};
+
+/***********************************************************************/
+
+#endif
+