fixed some bugs

[mothur.git] / sharedjackknife.cpp

diff --git a/sharedjackknife.cpp b/sharedjackknife.cpp
index 6db2d112d8050dfb436e5fda155c7f2c7741d8cd..c1e5ff4ec4c56a1f5eddad239a9b21f6e0deb72c 100644 (file)
--- a/sharedjackknife.cpp
+++ b/sharedjackknife.cpp
@@ -12,7 +12,7 @@
 /***************************************************************************************
 
 ***************************************************************************************/
-double SharedJackknife::simpson(int abunds[], double numInd, int numBins){
+double SharedJackknife::simpson(vector<int> abunds, double numInd, int numBins){
        double denom = numInd*(numInd-1);
        double sum = 0;
        for(int i = 0; i < numBins; i++)
@@ -25,7 +25,7 @@ double SharedJackknife::simpson(int abunds[], double numInd, int numBins){
 
 double* SharedJackknife::jackknife(){          
        int numBins = groups.at(0)->getNumBins()-1;
-       int cArray[numBins];
+       vector<int> cArray(numBins);
        for(int i = 0; i < numBins; i++)
                cArray[i] = 0;
 
@@ -39,7 +39,7 @@ double* SharedJackknife::jackknife(){
 
        double baseD = 1/simpson(cArray, numInd, numBins);
        
-       double pseudoVals[numBins];
+       vector<double> pseudoVals(numBins);
        double jackknifeEstimate = 0;
        for(int i = 0; i < numGroups; i++) {
                for(int j = 0; j < numBins-1; j++) {