moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedjabund.cpp

diff --git a/sharedjabund.cpp b/sharedjabund.cpp
deleted file mode 100644 (file)
index d86fcb8..0000000
--- a/sharedjabund.cpp
+++ /dev/null
@@ -1,35 +0,0 @@
-/*
- *  sharedjabund.cpp
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedjabund.h"
-
-/***********************************************************************/
-
-EstOutput JAbund::getValues(vector<SharedRAbundVector*> shared) {
-       try {
-               EstOutput UVest;
-               UVest.resize(2,0);
-               data.resize(1,0);
-               
-               UVest = uv->getUVest(shared);
-               
-               //UVest[0] is Uest UVest[1] is Vest
-               data[0] = 1.0-(UVest[0] * UVest[1]) / ((float)(UVest[0] + UVest[1] - (UVest[0] * UVest[1])));
-               if(data[0] > 1){data[0] = 0;    }
-               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "JAbund", "getValues");
-               exit(1);
-       }
-}
-
-/***********************************************************************/