added groups option to read.otu, added qtrim option to trim.seqs, fixed bug in get...

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index f0c24884f05d36f3ed5981ef0ef75a7c57e17a8a..b305e9a7d9f3256eef03cac34387caea99f4b4ae 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -34,11 +34,14 @@ public:
 private:
        void printSharedData(vector<SharedRAbundVector*>);
        void createMisMatchFile();
+       bool isValidGroup(string, vector<string>);
+       
        GlobalData* globaldata;
        ReadOTUFile* read;
        SharedListVector* SharedList;
        InputData* input;
        GroupMap* groupMap;
+       vector<string> groups;
        ofstream out;
        string filename, fileroot;
        bool firsttime;