added list parameter to get.seqs and remove.seqs and added readline library for inter...

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index b305e9a7d9f3256eef03cac34387caea99f4b4ae..5b922b6d6255eb993f8607fedc9696d4054f7caa 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -35,6 +35,7 @@ private:
        void printSharedData(vector<SharedRAbundVector*>);
        void createMisMatchFile();
        bool isValidGroup(string, vector<string>);
+       void eliminateZeroOTUS(vector<SharedRAbundVector*>&);
        
        GlobalData* globaldata;
        ReadOTUFile* read;
@@ -44,7 +45,7 @@ private:
        vector<string> groups;
        ofstream out;
        string filename, fileroot;
-       bool firsttime;
+       bool firsttime, pickedGroups;
        map<string, ofstream*> filehandles;
        map<string, ofstream*>::iterator it3;