modified read.otu and shared command

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index ca0ddd833636e6550cb48832517cdc96f912977e..3467c7b1d9e6beb1bcd2b5af9a63f9d9bbaf8045 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -37,11 +37,12 @@ private:
        ReadOTUFile* read;
        SharedListVector* SharedList;
        InputData* input;
-       //map<string, SharedRAbundVector*>::iterator it;
-       //vector<SharedRAbundVector*> lookup;
+       GroupMap* groupMap;
        ofstream out;
-       string filename;
+       string filename, fileroot;
        bool firsttime;
+       map<string, ofstream*> filehandles;
+       map<string, ofstream*>::iterator it3;
 
 };