added modify names parameter to set.dir

[mothur.git] / sharedcommand.cpp

diff --git a/sharedcommand.cpp b/sharedcommand.cpp
index 91ca1a15cc7b3d6bad67331e129b57c6819e34b4..8d5d89c3a96843b5fd1c8aafa112f25c3b216e1f 100644 (file)
--- a/sharedcommand.cpp
+++ b/sharedcommand.cpp
@@ -766,7 +766,7 @@ int SharedCommand::createSharedFromListGroup(string filename) {
             m->setAllGroups(allGroups);
         }else{
             countTable = new CountTable();
-            countTable->readTable(countfile);
+            countTable->readTable(countfile, true);
         }
         
         if (m->control_pressed) { return 0; }