added warning about average neighbor merges around cutoff. fixed little bugs.

[mothur.git] / sharedcommand.cpp

diff --git a/sharedcommand.cpp b/sharedcommand.cpp
index c827207f76529ebf79e8008deea7f245498a40b6..89f57eb5ca1aa80bf0d72d5aa47fcdabca6d8ef2 100644 (file)
--- a/sharedcommand.cpp
+++ b/sharedcommand.cpp
@@ -288,10 +288,10 @@ void SharedCommand::createMisMatchFile() {
                                        string name = names.substr(0,names.find_first_of(','));
                                        names = names.substr(names.find_first_of(',')+1, names.length());
                                        string group = groupMap->getGroup(name);
-                                       
+       cout << name << endl;                           
                                        if(group == "not found") {      outMisMatch << name << endl;  }
                                }
-                               
+       cout << names << endl;                  
                                //get last name
                                string group = groupMap->getGroup(names);
                                if(group == "not found") {      outMisMatch << names << endl;  }