moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sharedchao1.h

diff --git a/sharedchao1.h b/sharedchao1.h
deleted file mode 100644 (file)
index ae07a87..0000000
--- a/sharedchao1.h
+++ /dev/null
@@ -1,49 +0,0 @@
-#ifndef SHAREDCHAO1_H
-#define SHAREDCHAO1_H
-/*
- *  sharedchao1.h
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-/* This class implements the Sharedchao1 estimator on two groups. 
-It is a child of the calculator class. */
-
-
-#include "calculator.h"
-
-/***********************************************************************/
-
-
-class SharedChao1 : public Calculator  {
-       
-       public: 
-               SharedChao1() : Calculator("sharedchao", 1, true) {};
-               EstOutput getValues(SAbundVector*) {return data;};
-               EstOutput getValues(vector<SharedRAbundVector*>);
-               string getCitation() { return "http://www.mothur.org/wiki/Sharedchao"; }
-       private:
-               IntNode* f1root;
-               IntNode* f2root;
-               vector<IntNode*> f1leaves;
-               vector<IntNode*> f2leaves;
-               int numLeaves;
-               int numNodes;
-
-               void initialTree(int);  //builds trees structure with n leaf nodes initialized to 0.
-               void setCoef(IntNode*, int);
-               void updateTree(vector<int>); //take vector containing the abundance info. for a bin and updates trees.
-               void updateBranchf1(IntNode*, vector<int>, int);  //pointer, vector of abundance values, index into vector
-               void updateBranchf2(IntNode*, vector<int>, int);  //pointer, vector of abundance values, index into vector
-               
-               //for debugging
-               void printTree();
-               void printBranch(IntNode*);
-};
-
-/***********************************************************************/
-
-#endif