removed "shared" from some of the calculator names and classes

[mothur.git] / sharedbdiversity.cpp

diff --git a/sharedbdiversity.cpp b/sharedbdiversity.cpp
index 3d314c35d0cbdddf6ece3c5d28b41ad5b69945ab..d00385d79f4597ea691650933ad996f844f6e0d5 100644 (file)
--- a/sharedbdiversity.cpp
+++ b/sharedbdiversity.cpp
@@ -11,7 +11,7 @@
 
 /***********************************************************************/
 
-double SharedBDiversity::whitt(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
+double BDiversity::whitt(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
        double nz1 = (double)shared1->numNZ();
        double nz2 = (double)shared2->numNZ();
        double sum = nz1;
@@ -25,7 +25,7 @@ double SharedBDiversity::whitt(SharedRAbundVector* shared1, SharedRAbundVector*
 
 /***********************************************************************/
 
-double SharedBDiversity::ms(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
+double BDiversity::ms(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
        double a = 0;
        double b = 0;
        double c = 0;
@@ -46,7 +46,7 @@ double SharedBDiversity::ms(SharedRAbundVector* shared1, SharedRAbundVector* sha
 
 /***********************************************************************/
 
-double SharedBDiversity::sor(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
+double BDiversity::sor(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
        double sum = 0;
        double asum = 0;
        double bsum = 0;
@@ -67,7 +67,7 @@ double SharedBDiversity::sor(SharedRAbundVector* shared1, SharedRAbundVector* sh
 
 /***********************************************************************/
 
-double SharedBDiversity::mor(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
+double BDiversity::mor(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
        double multSum = 0;
        double powSum1 = 0;
        double powSum2 = 0;
@@ -87,7 +87,7 @@ double SharedBDiversity::mor(SharedRAbundVector* shared1, SharedRAbundVector* sh
 }
 /***********************************************************************/
        
-EstOutput SharedBDiversity::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
+EstOutput BDiversity::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2){
        try {
                data.resize(4,0);
                
@@ -113,11 +113,11 @@ EstOutput SharedBDiversity::getValues(SharedRAbundVector* shared1, SharedRAbundV
        }
                
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the NPShannon class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               cout << "Standard Error: " << e.what() << " has occurred in the BDiversity class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
                exit(1);
        }
        catch(...) {
-               cout << "An unknown error has occurred in the NPShannon class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               cout << "An unknown error has occurred in the BDiversity class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
                exit(1);
        }       
 }