working on pam

[mothur.git] / sffmultiplecommand.h

diff --git a/sffmultiplecommand.h b/sffmultiplecommand.h
index ee83d727ad3b3a1e910f4b3cb633eae53938f87a..1a492a82155fe0a7314b8c2ec54a9a4b37017909 100644 (file)
--- a/sffmultiplecommand.h
+++ b/sffmultiplecommand.h
@@ -42,7 +42,8 @@ private:
                int end;
                linePair(int i, int j) : start(i), end(j) {}
        };
-
+    
+    string inputDir;
        string filename, outputDir, flowOrder, lookupFileName, minDelta;
        vector<string> outputNames;
        bool abort, trim, large, flip, allFiles, keepforward, append, makeGroup;