added unix to ifdefs. minor changes while testing 1.24.0.

[mothur.git] / sffinfocommand.h

diff --git a/sffinfocommand.h b/sffinfocommand.h
index 903a589cd777b89b7e508e48d1173d550210f864..837435b3a6ca4c4c7f2e7e7579141b8fbece342b 100644 (file)
--- a/sffinfocommand.h
+++ b/sffinfocommand.h
@@ -82,7 +82,7 @@ private:
        bool abort, fasta, qual, trim, flow, sfftxt, hasAccnos;
        int mycount;
        set<string> seqNames;
-       
+    
        //extract sff file functions
        int extractSffInfo(string, string);
        int readCommonHeader(ifstream&, CommonHeader&);
@@ -98,7 +98,8 @@ private:
        int printQualSeqData(ofstream&, seqRead&, Header&);
        int readAccnosFile(string);
        int parseSffTxt();
-       
+       bool sanityCheck(Header&, seqRead&);
+    
        //parsesfftxt file functions
        int parseHeaderLineToInt(ifstream&);
        vector<unsigned short> parseHeaderLineToFloatVector(ifstream&, int);